Project publications

The original articles listed below have been published in scientific journals, and mainly describe results from Work Package 3. In case of co-authorship, the work of one or several of the contributing authors has been funded by EUROFORGEN-NoE.

Research papers published with the contribution of Jagiellonian University were cofinanced from the resources for Polish science in years 2012-2016, grant no 20/7.PR/2012.

2018

Predicting the origin of stains from next generation sequencing mRNA data.

Forensic science international. Genetics. 2018 May;34:37-48

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Authors: Dørum G, Ingold S, Hanson E, Ballantyne J, Snipen L, Haas C

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Body fluid identification using a targeted mRNA massively parallel sequencing approach - results of a EUROFORGEN/EDNAP collaborative exercise.

Forensic science international. Genetics. 2018 May;34:105-115

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Authors: Ingold S, Dørum G, Hanson E, Berti A, Branicki W, Brito P, Elsmore P, Gettings KB, Giangasparo F, Gross TE, Hansen S, Hanssen EN, Kampmann ML, Kayser M, Laurent FX, Morling N, Mosquera-Miguel A, Parson W, Phillips C, Porto MJ, Po[piech E, Roeder AD, Schneider PM, Schulze Johann K, Steffen CR, Syndercombe-Court D, Trautmann M, van den Berge M, van der Gaag KJ, Vannier J, Verdoliva V, Vidaki A, Xavier C, Ballantyne J, Haas C

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Messenger RNA biomarker signatures for forensic body fluid identification revealed by targeted RNA sequencing.

Forensic science international. Genetics. 2018 May;34:206-221

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Authors: Hanson E, Ingold S, Haas C, Ballantyne J

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2017

Characterization of degradation and heterozygote balance by simulation of the forensic DNA analysis process.

International journal of legal medicine. 2017 Mar;131(2):303-317

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Authors: Hansson O, Egeland T, Gill P

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Characterisation of artefacts and drop-in events using STR-validator and single-cell analysis.

Forensic science international. Genetics. 2017 Sep;30:57-65

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Authors: Hansson O, Gill P

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Open source software EuroForMix can be used to analyse complex SNP mixtures.

Forensic science international. Genetics. 2017 Nov;31:105-110

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Authors: Bleka Ø, Eduardoff M, Santos C, Phillips C, Parson W, Gill P

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2016

A 17-month time course study of human RNA and DNA degradation in body fluids under dry and humid environmental conditions.

International journal of legal medicine. 2016 Nov;130(6):1431-1438

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Authors: Sirker M, Schneider PM, Gomes I

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Evaluating the forensic application of 19 target microRNAs as biomarkers in body fluid and tissue identification.

Forensic science international. Genetics. 2017 Mar;27:41-49

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Authors: Sirker M, Fimmers R, Schneider PM, Gomes I

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Inter-laboratory evaluation of the EUROFORGEN Global ancestry-informative SNP panel by massively parallel sequencing using the Ion PGMâ„¢.

Forensic science international. Genetics. 2016 Jul;23:178-189

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Authors: Eduardoff M, Gross TE, Santos C, de la Puente M, Ballard D, Strobl C, Børsting C, Morling N, Fusco L, Hussing C, Egyed B, Souto L, Uacyisrael J, Syndercombe Court D, Carracedo Á, Lareu MV, Schneider PM, Parson W, Phillips C, EUROFORGEN-NoE Consortium, Parson W, Phillips C

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Prevalence of human cell material: DNA and RNA profiling of public and private objects and after activity scenarios.

Forensic science international. Genetics. 2016 Mar;21:81-9

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Authors: van den Berge M, Ozcanhan G, Zijlstra S, Lindenbergh A, Sijen T

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Analysis and implications of the miscarriages of justice of Amanda Knox and Raffaele Sollecito.

Forensic science international. Genetics. 2016 Jul;23:9-18

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Authors: Gill P

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EuroForMix: An open source software based on a continuous model to evaluate STR DNA profiles from a mixture of contributors with artefacts.

Forensic science international. Genetics. 2016 Mar;21:35-44

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Authors: Bleka Ø, Storvik G, Gill P

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Exclusion probabilities and likelihood ratios with applications to mixtures.

International journal of legal medicine. 2016 Jan;130(1):39-57

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Authors: Slooten KJ, Egeland T

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2015

Forensic ancestry analysis with two capillary electrophoresis ancestry informative marker (AIM) panels: Results of a collaborative EDNAP exercise.

Forensic science international. Genetics. 2015 Nov;19:56-67

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Authors: Santos C, Fondevila M, Ballard D, Banemann R, Bento AM, Børsting C, Branicki W, Brisighelli F, Burrington M, Capal T, Chaitanya L, Daniel R, Decroyer V, England R, Gettings KB, Gross TE, Haas C, Harteveld J, Hoff-Olsen P, Hoffmann A, Kayser M, Kohler P, Linacre A, Mayr-Eduardoff M, McGovern C, Morling N, O'Donnell G, Parson W, Pascali VL, Porto MJ, Roseth A, Schneider PM, Sijen T, Stenzl V, Court DS, Templeton JE, Turanska M, Vallone PM, Oorschot RAHV, Zatkalikova L, Carracedo Á, Phillips C, EUROFORGEN-NoE Consortium

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Evaluation of DNA variants associated with androgenetic alopecia and their potential to predict male pattern baldness.

PloS one. 2015;10(5):e0127852

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Authors: MarciDska M, Po[piech E, Abidi S, Andersen JD, van den Berge M, Carracedo Á, Eduardoff M, Marczakiewicz-Lustig A, Morling N, Sijen T, Skowron M, Söchtig J, Syndercombe-Court D, Weiler N, EUROFORGEN-NoE Consortium, Schneider PM, Ballard D, Børsting C, Parson W, Phillips C, Branicki W

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Inter-laboratory evaluation of SNP-based forensic identification by massively parallel sequencing using the Ion PGMâ„¢.

Forensic science international. Genetics. 2015 Jul;17:110-121

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Authors: Eduardoff M, Santos C, de la Puente M, Gross TE, Fondevila M, Strobl C, Sobrino B, Ballard D, Schneider PM, Carracedo Á, Lareu MV, Parson W, Phillips C

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Models and implementation for relationship problems with dropout.

International journal of legal medicine. 2015 May;129(3):411-23

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Authors: Dørum G, Kling D, Baeza-Richer C, García-Magariños M, Sæbø S, Desmyter S, Egeland T

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Secondary and subsequent DNA transfer during criminal investigation.

Forensic science international. Genetics. 2015 Jul;17:155-162

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Authors: Fonneløp AE, Egeland T, Gill P

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The effect of varying the number of contributors on likelihood ratios for complex DNA mixtures.

Forensic science international. Genetics. 2015 Nov;19:92-99

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Authors: Benschop CCG, Haned H, Jeurissen L, Gill PD, Sijen T

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Evaluation of the predictive capacity of DNA variants associated with straight hair in Europeans.

Forensic science international. Genetics. 2015 Nov;19:280-288

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Authors: Po[piech E, KarBowska-Pik J, MarciDska M, Abidi S, Andersen JD, Berge MVD, Carracedo Á, Eduardoff M, Freire-Aradas A, Morling N, Sijen T, Skowron M, Söchtig J, Syndercombe-Court D, Weiler N, Schneider PM, Ballard D, Børsting C, Parson W, Phillips C, Branicki W, EUROFORGEN-NoE Consortium

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Complex DNA mixture analysis in a forensic context: evaluating the probative value using a likelihood ratio model.

Forensic science international. Genetics. 2015 May;16:17-25

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Authors: Haned H, Benschop CCG, Gill PD, Sijen T

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Molecular approaches for forensic cell type identification: On mRNA, miRNA, DNA methylation and microbial markers.

Forensic science international. Genetics. 2015 Sep;18:21-32

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Authors: Sijen T

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Genotyping and interpretation of STR-DNA: Low-template, mixtures and database matches-Twenty years of research and development.

Forensic science international. Genetics. 2015 Sep;18:100-17

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Authors: Gill P, Haned H, Bleka O, Hansson O, Dørum G, Egeland T

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2015 - FSI Supplement Series

Title	First author	Reference
Impact of using validated or standard reference genes for miRNA qPCR data normalization in cell type identification	Sirker, M. et al.	Forensic Sci. Int. Genet. Suppl. Ser. 2015, 5, 199-201
When global science meets local legality: Deliberating and regulating forensic genetics	Williams, Robin	Forensic Sci. Int. Genet. Suppl. Ser. 2015, 5, 569-571
Typing of 111 ancestry informative markers in an Albanian population	Ribeiro, J. et al.	Forensic Sci. Int. Genet. Suppl. Ser. 2015, 5, 124-125
The open-source software LRmix can be used to analyse SNP mixtures	Gill, Peter et al.	Forensic Sci. Int. Genet. Suppl. Ser. 2015, 5, 50-51

2014

Developmental validation of the HIrisPlex system: DNA-based eye and hair colour prediction for forensic and anthropological usage.

Forensic science international. Genetics. 2014 Mar;9:150-61

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Authors: Walsh S, Chaitanya L, Clarisse L, Wirken L, Draus-Barini J, Kovatsi L, Maeda H, Ishikawa T, Sijen T, de Knijff P, Branicki W, Liu F, Kayser M

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Improved visibility of character conflicts in quasi-median networks with the EMPOP NETWORK software.

Croatian medical journal. 2014 Apr;55(2):115-20

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Authors: Zimmermann B, Rock AW, Dur A, Parson W

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Regression models for DNA-mixtures.

Forensic science international. Genetics. 2014 Jul;11:105-10

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Authors: Kaur N, Fonneløp AE, Egeland T

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The common occurrence of epistasis in the determination of human pigmentation and its impact on DNA-based pigmentation phenotype prediction.

Forensic science international. Genetics. 2014 Jul;11:64-72

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Authors: Po[piech E, Wojas-Pelc A, Walsh S, Liu F, Maeda H, Ishikawa T, Skowron M, Kayser M, Branicki W

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Exclusion probabilities and likelihood ratios with applications to kinship problems.

International journal of legal medicine. 2014 May;128(3):415-25

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Authors: Slooten KJ, Egeland T

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A collaborative European exercise on mRNA-based body fluid/skin typing and interpretation of DNA and RNA results.

Forensic science international. Genetics. 2014 May;10:40-48

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Authors: van den Berge M, Carracedo A, Gomes I, Graham EAM, Haas C, Hjort B, Hoff-Olsen P, Maroñas O, Mevåg B, Morling N, Niederstätter H, Parson W, Schneider PM, Court DS, Vidaki A, Sijen T

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Mixtures with relatives: a pedigree perspective.

Forensic science international. Genetics. 2014 May;10:49-54

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Authors: Egeland T, Dørum G, Vigeland MD, Sheehan NA

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Development of forensic-quality full mtGenome haplotypes: success rates with low template specimens.

Forensic science international. Genetics. 2014 May;10:73-79

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Authors: Just RS, Scheible MK, Fast SA, Sturk-Andreaggi K, Higginbotham JL, Lyons EA, Bush JM, Peck MA, Ring JD, Diegoli TM, Röck AW, Huber GE, Nagl S, Strobl C, Zimmermann B, Parson W, Irwin JA

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Euroforgen-NoE collaborative exercise on LRmix to demonstrate standardization of the interpretation of complex DNA profiles.

Forensic science international. Genetics. 2014 Mar;9:47-54

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Authors: Prieto L, Haned H, Mosquera A, Crespillo M, Alemañ M, Aler M, Alvarez F, Baeza-Richer C, Dominguez A, Doutremepuich C, Farfán MJ, Fenger-Grøn M, García-Ganivet JM, González-Moya E, Hombreiro L, Lareu MV, Martínez-Jarreta B, Merigioli S, Milans Del Bosch P, Morling N, Muñoz-Nieto M, Ortega-González E, Pedrosa S, Pérez R, Solís C, Yurrebaso I, Gill P

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Database extraction strategies for low-template evidence.

Forensic science international. Genetics. 2014 Mar;9:134-41

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Authors: Bleka Ø, Dørum G, Haned H, Gill P

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Exact computation of the distribution of likelihood ratios with forensic applications.

Forensic science international. Genetics. 2014 Mar;9:93-101

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Authors: Dørum G, Bleka Ø, Gill P, Haned H, Snipen L, Sæbø S, Egeland T

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A general approach to power calculation for relationship testing.

Forensic science international. Genetics. 2014 Mar;9:186-90

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Authors: Egeland T, Pinto N, Vigeland MD

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Does an English appeal court ruling increase the risks of miscarriages of justice when complex DNA profiles are searched against the national DNA database?

Forensic science international. Genetics. 2014 Nov;13:167-75

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Authors: Gill P, Bleka Ø, Egeland T

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Familias 3 - Extensions and new functionality.

Forensic science international. Genetics. 2014 Nov;13:121-7

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Authors: Kling D, Tillmar AO, Egeland T

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Technological innovations in forensic genetics: social, legal and ethical aspects.

Recent advances in DNA & gene sequences. 2014;8(2):98-103

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Authors: Wienroth M, Morling N, Williams R

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Building a forensic ancestry panel from the ground up: The EUROFORGEN Global AIM-SNP set.

Forensic science international. Genetics. 2014 Jul;11:13-25

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Authors: Phillips C, Parson W, Lundsberg B, Santos C, Freire-Aradas A, Torres M, Eduardoff M, Børsting C, Johansen P, Fondevila M, Morling N, Schneider P, EUROFORGEN-NoE Consortium, Carracedo A, Lareu MV

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A new dimension of the forensic DNA expertise - the need for training experts and expertise recipients.

Archiwum medycyny sadowej i kryminologii. 2014;64(3):175-94

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Authors: Branicki W, Po[piech E, Kupiec T, Styrna J

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STR-validator: an open source platform for validation and process control.

Forensic science international. Genetics. 2014 Nov;13:154-66

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Authors: Hansson O, Gill P, Egeland T

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2013

Development of a mRNA profiling multiplex for the inference of organ tissues.

International journal of legal medicine. 2013 Sep;127(5):891-900

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Authors: Lindenbergh A, van den Berge M, Oostra RJ, Cleypool C, Bruggink A, Kloosterman A, Sijen T

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Bona fide colour: DNA prediction of human eye and hair colour from ancient and contemporary skeletal remains.

Investigative genetics. 2013 Jan 14;4(1):3

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Authors: Draus-Barini J, Walsh S, Po[piech E, Kupiec T, GBb H, Branicki W, Kayser M

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High-throughput analysis using AmpFlSTRÂ® IdentifilerÂ® with the Applied Biosystems 3500xl Genetic Analyser.

Forensic science international. Genetics. 2013 Jan;7(1):92-7

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Authors: Kirkham A, Haley J, Haile Y, Grout A, Kimpton C, Al-Marzouqi A, Gill P

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A new methodological framework to interpret complex DNA profiles using likelihood ratios.

Forensic science international. Genetics. 2013 Feb;7(2):251-63

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Authors: Gill P, Haned H

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Prediction of eye color in the Slovenian population using the IrisPlex SNPs.

Croatian medical journal. 2013 Aug;54(4):381-6

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Authors: Kastelic V, Po[piech E, Draus-Barini J, Branicki W, Drobni K

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High resolution mapping of Y haplogroup G in Tyrol (Austria).

Forensic science international. Genetics. 2013 Sep;7(5):529-36

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Authors: Berger B, Niederstätter H, Erhart D, Gassner C, Schennach H, Parson W

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Concept for estimating mitochondrial DNA haplogroups using a maximum likelihood approach (EMMA).

Forensic science international. Genetics. 2013 Dec;7(6):601-609

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Authors: Röck AW, Dür A, van Oven M, Parson W

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Multiple recurrent mutations at four human Y-chromosomal single nucleotide polymorphism sites in a 37 bp sequence tract on the ARSDP1 pseudogene.

Forensic science international. Genetics. 2013 Dec;7(6):593-600

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Authors: Niederstätter H, Berger B, Erhart D, Willuweit S, Geppert M, Gassner C, Schennach H, Parson W, Roewer L

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Mass spectrometric base composition profiling: Implications for forensic mtDNA databasing.

Forensic science international. Genetics. 2013 Dec;7(6):587-592

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Authors: Eduardoff M, Huber G, Bayer B, Schmid D, Anslinger K, Göbel T, Zimmermann B, Schneider PM, Röck AW, Parson W

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Comparison of morphological and molecular genetic sex-typing on mediaeval human skeletal remains.

Forensic science international. Genetics. 2013 Dec;7(6):581-586

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Authors: Bauer CM, Niederstätter H, McGlynn G, Stadler H, Parson W

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Evaluation of next generation mtGenome sequencing using the Ion Torrent Personal Genome Machine (PGM).

Forensic science international. Genetics. 2013 Sep;7(5):543-9

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Authors: Parson W, Strobl C, Huber G, Zimmermann B, Gomes SM, Souto L, Fendt L, Delport R, Langit R, Wootton S, Lagacé R, Irwin J

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2013 - FSI Supplement Series

Title	First author	Reference

Comparative analysis of two indel-based ancestry informative multiplex PCR typing kits	D. Zaumsegel	Forensic Sci. Int. Genet. Suppl. Ser. 2013, 4 (1), 21-22
Combined analysis of two different ancestry informative assays using SNPs and Indels in Eurasian populations	T. Gross	Forensic Sci. Int. Genet. Suppl. Ser. 2013, 4 (1), 23-26
A 1-year time course study of human RNA degradation in body fluids under dry and humid environmental conditions	M. Sirker	Forensic Sci. Int. Genet. Suppl. Ser. 2013, 4 (1), 164-165
On the meaning of the likelihood ratio: Is a large number always an indication of strength of evidence?	H. Haned	Forensic Sci. Int. Genet. Suppl. Ser. 2013, 4 (1), 176-177
Development and optimisation of five multiplex assays with 115 of the AIM SNPs from the EUROFORGEN AIMs set on the Sequenom® MassARRAY® system	B. Lundsberg	Forensic Sci. Int. Genet. Suppl. Ser. 2013, 4 (1), 182-183
Free open source software for internal validation of forensic STR typing kits	O. Hansson	Forensic Sci. Int. Genet. Suppl. Ser. 2013, 4 (1), 300-301

Likelihood ratios for complex mixtures with relatives	G. Dorum	Forensic Sci. Int. Genet. Suppl. Ser. 4 (2013) e61–e62

2012

Exploratory data analysis for the interpretation of low template DNA mixtures.

Forensic science international. Genetics. 2012 Dec;6(6):762-74

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Authors: Haned H, Slooten K, Gill P

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